We have added a new Python script to the pipeline for consistent and standardized contig naming for self-provided assemblies. The script automatically renames contigs in FASTA files to the format: <assembly>:bin_NA@contig_########

We’ve added eggNOG 7 annotation to the MetaG pipeline. The new rules run eggNOG 7 on genes predicted with Prodigal, generating functional annotations for all assemblies automatically. The contig_annotate__eggnog7_run rule uses a containerized version of EggNOG 7 and handles all resource allocation… Read More »eggNOG 7 added to the metaG pipeline

Today I drafted a release version for the webpage. Naturally, it contains still little information and is also populated with stockphotos rather than real, project pictures but it serves already the purpose to provide the entry point snakep.it for the… Read More »Release version ready

Today we placed the foundation for the Snakebite hub, called Snakepit. Although there are already plenty of Snakemake pipelines available out there, I feel there is no central place where the communithy could go and download ready-made, fully configured pipelines… Read More »Webpage started