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Snakebite pipelines

The idea of Snakebite pipelines is to provide a uniform framework for different bioinformatics analyses, like RNA-seq, metagenomics, miRNA-seq, etc. Pipelines are written in Snakemake and aim to follow the same naming scheme for rules and output files as well as folder structure and server resource allocation.

Exclusive outputs of Snakebite pipelines are the extensive final report and intermediate rule- reports, that provide ready-to publish figures as well as plenty of material for troubleshooting and in-depth knowledge about the data.