Snakebite pipelines
The idea of Snakebite pipelines is to provide a uniform framework for different bioinformatics analyses, like RNA-seq, metagenomics, miRNA-seq, etc. Pipelines are written in Snakemake and aim to follow the same naming scheme for rules and output files as well as folder structure and server resource allocation.
![](http://snakep.it/wp-content/uploads/2023/03/chris-liverani-dBI_My696Rk-unsplash-1024x768.jpg)
Exclusive outputs of Snakebite pipelines are the extensive final report and intermediate rule- reports, that provide ready-to publish figures as well as plenty of material for troubleshooting and in-depth knowledge about the data.